Galaxy | Tool name | Galaxy |
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| URL | http://main.g2.bx.psu.edu/ |
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| Important features | 1. It is an open web based software to perform computational analysis of genomic data.
2. It allows user to repeat, store and annotate the analysized data in an interactive web based format.
3. It has tools for QC and manipulation, mapping tools like Bowtie (Illumina, SOLiD), LASTZ, Megablast (Roche 454), BWA (Illumina, SOLiD), SAMTools, TopHat, Cufflinks for RNA analysis.
4. It doesn't need any programming knowledge. |
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| Citations | Taylor J, Schenck I, Blankenberg D, Nekrutenko A. Using galaxy to perform large-scale interactive data analyses. Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5. PubMed PMID: 18428782. |
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Alignment/Mapping, RNA seq alignment, SNP discovery, Indel discovery, ChIP seq analysis, RNA seq analysis, Software package |
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| Category | Free, Online, Downloadable |
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| License | |
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| Status | Working |
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| Input file format | |
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| Output file format | |
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| Operating system | Windows 32/64bit
Linux/Unix 32/64bit |
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| Operating language | Python |
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| Platform | ABI SOLiD, Illumina/Solexa, Roche 454 |
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| Maintained by | CCGB at Penn State and Computer Science departments at Emory University. |
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| Downloadable file format | |
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| Submission file format | |
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